HL_1I97_008

3D structure

PDB id

1I97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

4.5 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1I97_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1758

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1I97|1|A|C|315
1I97|1|A|A|316
1I97|1|A|C|317
1I97|1|A|U|318
1I97|1|A|G|319
1I97|1|A|A|320
1I97|1|A|G|321
1I97|1|A|A|322
1I97|1|A|C|323
1I97|1|A|A|324
1I97|1|A|C|325
1I97|1|A|G|326
1I97|1|A|G|327
1I97|1|A|G|328

Current chains

Chain A

16S RRNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20