HL_1IBL_004
3D structure
- PDB id
- 1IBL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.11 Å
Loop
- Sequence
- CCUUGG
- Length
- 6 nucleotides
- Bulged bases
- 1IBL|1|A|U|190|||E, 1IBL|1|A|G|190|||F
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1IBL_004 not in the Motif Atlas
- Homologous match to HL_4LFB_004
- Geometric discrepancy: 0.1172
- The information below is about HL_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48417.6
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
1IBL|1|A|C|190|||B
1IBL|1|A|C|190|||C
1IBL|1|A|U|190|||D
1IBL|1|A|U|190|||E
1IBL|1|A|G|190|||F
1IBL|1|A|G|190|||G
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain Q
- 30S RIBOSOMAL PROTEIN S17
Coloring options: