HL_1IBM_004

3D structure

PDB id

1IBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

1IBM|1|A|U|190|||E, 1IBM|1|A|G|190|||F

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1IBM_004 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.1042

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

1IBM|1|A|C|190|||B
1IBM|1|A|C|190|||C
1IBM|1|A|U|190|||D
1IBM|1|A|U|190|||E
1IBM|1|A|G|190|||F
1IBM|1|A|G|190|||G

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain Q

30S RIBOSOMAL PROTEIN S17