HL_1IKD_029

3D structure

PDB id

1IKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

ACCEPTOR STEM, NMR, 30 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

1IKD|29|A|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1IKD_029 not in the Motif Atlas

Geometric match to HL_3U4M_001

Geometric discrepancy: 0.2651

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

1IKD|29|A|C|7
1IKD|29|A|U|8
1IKD|29|A|U|9
1IKD|29|A|C|10
1IKD|29|A|G|11
1IKD|29|A|G|12

Current chains

Chain A

TRNA ALA ACCEPTOR STEM

Nearby chains