HL_1IL2_004

3D structure

PDB id

1IL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

U(PSU)AA(H2U)GG(H2U)CAGA

Length

12 nucleotides

Bulged bases

1IL2|1|D|G|1917, 1IL2|1|D|G|1918, 1IL2|1|D|C|1920

QA status

Modified nucleotides: PSU, H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1IL2_004 not in the Motif Atlas

Homologous match to HL_1IL2_001

Geometric discrepancy: 0.0834

The information below is about HL_1IL2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1IL2|1|D|U|1912
1IL2|1|D|PSU|1913
1IL2|1|D|A|1914
1IL2|1|D|A|1915
1IL2|1|D|H2U|1916
1IL2|1|D|G|1917
1IL2|1|D|G|1918
1IL2|1|D|H2U|1919
1IL2|1|D|C|1920
1IL2|1|D|A|1921
1IL2|1|D|G|1922
1IL2|1|D|A|1923

Current chains

Chain D

ASPARTYL TRANSFER RNA

Nearby chains

Chain B

ASPARTYL-TRNA SYNTHETASE