HL_1IL2_006

3D structure

PDB id

1IL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

G(5MU)(PSU)CAAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1IL2_006 not in the Motif Atlas

Homologous match to HL_1IL2_003

Geometric discrepancy: 0.0777

The information below is about HL_1IL2_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

1IL2|1|D|G|1953
1IL2|1|D|5MU|1954
1IL2|1|D|PSU|1955
1IL2|1|D|C|1956
1IL2|1|D|A|1957
1IL2|1|D|A|1958
1IL2|1|D|U|1959
1IL2|1|D|U|1960
1IL2|1|D|C|1961

Current chains

Chain D

ASPARTYL TRANSFER RNA

Nearby chains