HL_1J5E_008

3D structure

PDB id

1J5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5E_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0658

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1J5E|1|A|C|320
1J5E|1|A|A|321
1J5E|1|A|C|322
1J5E|1|A|U|323
1J5E|1|A|G|324
1J5E|1|A|A|325
1J5E|1|A|G|326
1J5E|1|A|A|327
1J5E|1|A|C|328
1J5E|1|A|A|329
1J5E|1|A|C|330
1J5E|1|A|G|331
1J5E|1|A|G|332
1J5E|1|A|G|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20