HL_1J5E_016

3D structure

PDB id

1J5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5E_016 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.0542

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

1J5E|1|A|C|726
1J5E|1|A|G|727
1J5E|1|A|A|728
1J5E|1|A|A|729
1J5E|1|A|G|730
1J5E|1|A|G|731

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain O

30S RIBOSOMAL PROTEIN S15