HL_1J5E_018

3D structure

PDB id

1J5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

1J5E|1|A|U|839, 1J5E|1|A|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5E_018 not in the Motif Atlas

Homologous match to HL_5J7L_018

Geometric discrepancy: 0.5122

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

1J5E|1|A|G|837
1J5E|1|A|G|838
1J5E|1|A|U|839
1J5E|1|A|C|840
1J5E|1|A|U|841
1J5E|1|A|C|848
1J5E|1|A|C|849

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2

Chain R

30S RIBOSOMAL PROTEIN S18