HL_1J5E_026

3D structure

PDB id

1J5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

1J5E|1|A|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5E_026 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.2567

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1J5E|1|A|G|1134
1J5E|1|A|U|1135
1J5E|1|A|U|1136
1J5E|1|A|C|1137
1J5E|1|A|G|1138
1J5E|1|A|G|1139
1J5E|1|A|C|1140

Current chains

Chain A

16S ribosomal RNA

Nearby chains