HL_1JGP_011
3D structure
- PDB id
- 1JGP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7 Å
Loop
- Sequence
- A(OMC)U(OMG)AA(YG)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, OMG, YG, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1JGP_011 not in the Motif Atlas
- Geometric match to HL_7VNV_002
- Geometric discrepancy: 0.2153
- The information below is about HL_7VNV_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
1JGP|1|C|A|31
1JGP|1|C|OMC|32
1JGP|1|C|U|33
1JGP|1|C|OMG|34
1JGP|1|C|A|35
1JGP|1|C|A|36
1JGP|1|C|YG|37
1JGP|1|C|A|38
1JGP|1|C|PSU|39
Current chains
- Chain C
- tRNA(Phe)
Nearby chains
- Chain 1
- MESSENGER RNA MV36
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain D
- tRNA(Phe)
- Chain L
- 30S RIBOSOMAL PROTEIN S9
- Chain P
- 30S RIBOSOMAL PROTEIN S13
Coloring options: