HL_1JGQ_002
3D structure
- PDB id
- 1JGQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5 Å
Loop
- Sequence
- AGA(OMC)U(OMG)AA(YG)A(PSU)(5MC)U
- Length
- 13 nucleotides
- Bulged bases
- 1JGQ|1|B|A|38
- QA status
- Modified nucleotides: OMC, OMG, YG, PSU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1JGQ_002 not in the Motif Atlas
- Geometric match to HL_4WFL_001
- Geometric discrepancy: 0.3508
- The information below is about HL_4WFL_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
1JGQ|1|B|A|29
1JGQ|1|B|G|30
1JGQ|1|B|A|31
1JGQ|1|B|OMC|32
1JGQ|1|B|U|33
1JGQ|1|B|OMG|34
1JGQ|1|B|A|35
1JGQ|1|B|A|36
1JGQ|1|B|YG|37
1JGQ|1|B|A|38
1JGQ|1|B|PSU|39
1JGQ|1|B|5MC|40
1JGQ|1|B|U|41
Current chains
- Chain B
- tRNA(Phe)
Nearby chains
- Chain 1
- MESSENGER RNA MF36
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain P
- 30S RIBOSOMAL PROTEIN S13
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