HL_1JJ2_011

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

1JJ2|1|0|U|328, 1JJ2|1|0|A|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_011 not in the Motif Atlas

Homologous match to HL_4V9F_011

Geometric discrepancy: 0.0385

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

1JJ2|1|0|G|326
1JJ2|1|0|A|327
1JJ2|1|0|U|328
1JJ2|1|0|A|329
1JJ2|1|0|C|330

Current chains

Chain 0

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L4

Chain S

RIBOSOMAL PROTEIN L24