HL_1JJ2_014
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GGCAUCGAC
- Length
- 9 nucleotides
- Bulged bases
- 1JJ2|1|0|G|417
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1JJ2_014 not in the Motif Atlas
- Homologous match to HL_4V9F_014
- Geometric discrepancy: 0.0313
- The information below is about HL_4V9F_014
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
1JJ2|1|0|G|416
1JJ2|1|0|G|417
1JJ2|1|0|C|418
1JJ2|1|0|A|419
1JJ2|1|0|U|420
1JJ2|1|0|C|421
1JJ2|1|0|G|422
1JJ2|1|0|A|423
1JJ2|1|0|C|424
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L44E
- Chain K
- RIBOSOMAL PROTEIN L15
- Chain L
- RIBOSOMAL PROTEIN L15E
Coloring options: