HL_1JJ2_025

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

1JJ2|1|0|A|874, 1JJ2|1|0|G|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_025 not in the Motif Atlas

Homologous match to HL_4V9F_025

Geometric discrepancy: 0.0178

The information below is about HL_4V9F_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

1JJ2|1|0|U|872
1JJ2|1|0|G|873
1JJ2|1|0|A|874
1JJ2|1|0|A|875
1JJ2|1|0|A|876
1JJ2|1|0|G|877
1JJ2|1|0|G|878

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2