HL_1JJ2_035

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCUGAUC

Length

7 nucleotides

Bulged bases

1JJ2|1|0|C|1431, 1JJ2|1|0|U|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_035 not in the Motif Atlas

Homologous match to HL_4V9F_035

Geometric discrepancy: 0.0259

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

1JJ2|1|0|G|1430
1JJ2|1|0|C|1431
1JJ2|1|0|U|1432
1JJ2|1|0|G|1433
1JJ2|1|0|A|1434
1JJ2|1|0|U|1435
1JJ2|1|0|C|1436

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L39E

Chain O

RIBOSOMAL PROTEIN L19E

Chain Q

RIBOSOMAL PROTEIN L22