HL_1JJ2_042

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

1JJ2|1|0|A|1689, 1JJ2|1|0|A|1691, 1JJ2|1|0|A|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_042 not in the Motif Atlas

Homologous match to HL_4V9F_042

Geometric discrepancy: 0.0261

The information below is about HL_4V9F_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

1JJ2|1|0|C|1687
1JJ2|1|0|G|1688
1JJ2|1|0|A|1689
1JJ2|1|0|C|1690
1JJ2|1|0|A|1691
1JJ2|1|0|C|1692
1JJ2|1|0|A|1693
1JJ2|1|0|G|1694

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L39E

Chain Q

RIBOSOMAL PROTEIN L22

Chain Z

RIBOSOMAL PROTEIN L37E