HL_1JJ2_049

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGUACAAG

Length

8 nucleotides

Bulged bases

1JJ2|1|0|A|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_049 not in the Motif Atlas

Homologous match to HL_4V9F_049

Geometric discrepancy: 0.0314

The information below is about HL_4V9F_049

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

1JJ2|1|0|C|1916
1JJ2|1|0|G|1917
1JJ2|1|0|U|1918
1JJ2|1|0|A|1919
1JJ2|1|0|C|1920
1JJ2|1|0|A|1921
1JJ2|1|0|A|1922
1JJ2|1|0|G|1923

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L44E