HL_1JJ2_055

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1JJ2|1|0|G|2283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_055 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.0239

The information below is about HL_4V9F_055

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

1JJ2|1|0|C|2281
1JJ2|1|0|U|2282
1JJ2|1|0|G|2283
1JJ2|1|0|G|2284
1JJ2|1|0|G|2285
1JJ2|1|0|G|2286
1JJ2|1|0|C|2287
1JJ2|1|0|G|2288
1JJ2|1|0|G|2289

Current chains

Chain 0

23S RRNA

Nearby chains

Chain H

RIBOSOMAL PROTEIN L10E