HL_1JJ2_056

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

1JJ2|1|0|A|2302, 1JJ2|1|0|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_056 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.0207

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

1JJ2|1|0|C|2298
1JJ2|1|0|G|2299
1JJ2|1|0|A|2300
1JJ2|1|0|A|2301
1JJ2|1|0|A|2302
1JJ2|1|0|A|2303
1JJ2|1|0|G|2304
1JJ2|1|0|A|2305
1JJ2|1|0|U|2306
1JJ2|1|0|A|2307
1JJ2|1|0|U|2308
1JJ2|1|0|C|2309
1JJ2|1|0|G|2310

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

RIBOSOMAL PROTEIN L10E

Chain P

RIBOSOMAL PROTEIN L21E