HL_1JJ2_058

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGCAAGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_058 not in the Motif Atlas

Homologous match to HL_4V9F_058

Geometric discrepancy: 0.03

The information below is about HL_4V9F_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

1JJ2|1|0|U|2358
1JJ2|1|0|G|2359
1JJ2|1|0|C|2360
1JJ2|1|0|A|2361
1JJ2|1|0|A|2362
1JJ2|1|0|G|2363
1JJ2|1|0|A|2364
1JJ2|1|0|G|2365

Current chains

Chain 0

23S RRNA

Nearby chains

Chain H

RIBOSOMAL PROTEIN L10E

Chain M

RIBOSOMAL PROTEIN L18

Chain P

RIBOSOMAL PROTEIN L21E