HL_1JJ2_063

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGCAGAAG

Length

8 nucleotides

Bulged bases

1JJ2|1|0|G|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_063 not in the Motif Atlas

Homologous match to HL_4V9F_063

Geometric discrepancy: 0.0359

The information below is about HL_4V9F_063

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

1JJ2|1|0|U|2563
1JJ2|1|0|G|2564
1JJ2|1|0|C|2565
1JJ2|1|0|A|2566
1JJ2|1|0|G|2567
1JJ2|1|0|A|2568
1JJ2|1|0|A|2569
1JJ2|1|0|G|2570

Current chains

Chain 0

23S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L6