HL_1JZX_040

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

1JZX|1|A|A|1630, 1JZX|1|A|A|1632, 1JZX|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZX_040 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.2421

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

1JZX|1|A|C|1628
1JZX|1|A|G|1629
1JZX|1|A|A|1630
1JZX|1|A|C|1631
1JZX|1|A|A|1632
1JZX|1|A|C|1633
1JZX|1|A|A|1634
1JZX|1|A|G|1635

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Ribosomal Protein L22