HL_1JZX_059

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZX_059 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.4086

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

1JZX|1|A|A|2450
1JZX|1|A|G|2451
1JZX|1|A|U|2452
1JZX|1|A|C|2453
1JZX|1|A|C|2454
1JZX|1|A|A|2455
1JZX|1|A|U|2456
1JZX|1|A|A|2457
1JZX|1|A|U|2458

Current chains

Chain A

23S rRNA

Nearby chains