HL_1JZX_065

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

1JZX|1|A|A|2730, 1JZX|1|A|G|2731, 1JZX|1|A|C|2735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZX_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.4345

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

1JZX|1|A|C|2725
1JZX|1|A|U|2726
1JZX|1|A|G|2727
1JZX|1|A|A|2728
1JZX|1|A|A|2729
1JZX|1|A|A|2730
1JZX|1|A|G|2731
1JZX|1|A|C|2732
1JZX|1|A|A|2733
1JZX|1|A|U|2734
1JZX|1|A|C|2735
1JZX|1|A|U|2736
1JZX|1|A|A|2737
1JZX|1|A|A|2738
1JZX|1|A|G|2739

Current chains

Chain A

23S rRNA

Nearby chains