HL_1JZX_079

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

1JZX|1|A|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZX_079 not in the Motif Atlas

Homologous match to HL_7A0S_018

Geometric discrepancy: 0.2024

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1JZX|1|A|U|575
1JZX|1|A|A|576
1JZX|1|A|U|577
1JZX|1|A|U|578
1JZX|1|A|G|579
1JZX|1|A|A|580
1JZX|1|A|A|581
1JZX|1|A|G|582
1JZX|1|A|C|583
1JZX|1|A|A|584

Current chains

Chain A

23S rRNA

Nearby chains