HL_1JZZ_027

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

1JZZ|1|A|A|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZZ_027 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2147

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

1JZZ|1|A|G|989
1JZZ|1|A|A|990
1JZZ|1|A|A|991
1JZZ|1|A|A|992
1JZZ|1|A|C|993
1JZZ|1|A|A|994
1JZZ|1|A|A|995
1JZZ|1|A|C|996

Current chains

Chain A

23S rRNA

Nearby chains