HL_1JZZ_033

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

1JZZ|1|A|G|1338, 1JZZ|1|A|U|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZZ_033 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1664

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

1JZZ|1|A|G|1337
1JZZ|1|A|G|1338
1JZZ|1|A|U|1339
1JZZ|1|A|C|1340
1JZZ|1|A|G|1341
1JZZ|1|A|U|1342
1JZZ|1|A|C|1343

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Ribosomal Protein L22