HL_1JZZ_037

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUCAGAAAAUCUAC

Length

15 nucleotides

Bulged bases

1JZZ|1|A|A|1507, 1JZZ|1|A|U|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZZ_037 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.141

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1JZZ|1|A|G|1503
1JZZ|1|A|G|1504
1JZZ|1|A|U|1505
1JZZ|1|A|C|1506
1JZZ|1|A|A|1507
1JZZ|1|A|G|1508
1JZZ|1|A|A|1509
1JZZ|1|A|A|1510
1JZZ|1|A|A|1511
1JZZ|1|A|A|1512
1JZZ|1|A|U|1513
1JZZ|1|A|C|1514
1JZZ|1|A|U|1515
1JZZ|1|A|A|1516
1JZZ|1|A|C|1517

Current chains

Chain A

23S rRNA

Nearby chains