HL_1JZZ_065

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

1JZZ|1|A|A|2730, 1JZZ|1|A|G|2731, 1JZZ|1|A|C|2735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZZ_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.4354

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

1JZZ|1|A|C|2725
1JZZ|1|A|U|2726
1JZZ|1|A|G|2727
1JZZ|1|A|A|2728
1JZZ|1|A|A|2729
1JZZ|1|A|A|2730
1JZZ|1|A|G|2731
1JZZ|1|A|C|2732
1JZZ|1|A|A|2733
1JZZ|1|A|U|2734
1JZZ|1|A|C|2735
1JZZ|1|A|U|2736
1JZZ|1|A|A|2737
1JZZ|1|A|A|2738
1JZZ|1|A|G|2739

Current chains

Chain A

23S rRNA

Nearby chains