HL_1JZZ_067

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

1JZZ|1|A|A|2795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZZ_067 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.1402

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.2

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

1JZZ|1|A|G|2794
1JZZ|1|A|A|2795
1JZZ|1|A|A|2796
1JZZ|1|A|G|2797
1JZZ|1|A|A|2798
1JZZ|1|A|C|2799
1JZZ|1|A|C|2800
1JZZ|1|A|A|2801
1JZZ|1|A|C|2802

Current chains

Chain A

23S rRNA

Nearby chains