HL_1JZZ_080

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

1JZZ|1|A|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZZ_080 not in the Motif Atlas

Homologous match to HL_7A0S_018

Geometric discrepancy: 0.2038

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1JZZ|1|A|U|575
1JZZ|1|A|A|576
1JZZ|1|A|U|577
1JZZ|1|A|U|578
1JZZ|1|A|G|579
1JZZ|1|A|A|580
1JZZ|1|A|A|581
1JZZ|1|A|G|582
1JZZ|1|A|C|583
1JZZ|1|A|A|584

Current chains

Chain A

23S rRNA

Nearby chains