HL_1K01_020

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCGAAUAG

Length

8 nucleotides

Bulged bases

1K01|1|A|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_020 not in the Motif Atlas

Homologous match to HL_7A0S_021

Geometric discrepancy: 0.4669

The information below is about HL_7A0S_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81314.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

1K01|1|A|C|651
1K01|1|A|C|652
1K01|1|A|G|653
1K01|1|A|A|654
1K01|1|A|A|655
1K01|1|A|U|656
1K01|1|A|A|657
1K01|1|A|G|658

Current chains

Chain A

23S rRNA

Nearby chains