HL_1K01_030

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGAAGC

Length

7 nucleotides

Bulged bases

1K01|1|A|G|1186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_030 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3961

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

1K01|1|A|G|1184
1K01|1|A|C|1185
1K01|1|A|G|1186
1K01|1|A|A|1187
1K01|1|A|A|1188
1K01|1|A|G|1189
1K01|1|A|C|1190

Current chains

Chain A

23S rRNA

Nearby chains