HL_1K01_035

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUCAAGAUUC

Length

10 nucleotides

Bulged bases

1K01|1|A|U|1409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_035 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.2682

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1K01|1|A|G|1402
1K01|1|A|U|1403
1K01|1|A|C|1404
1K01|1|A|A|1405
1K01|1|A|A|1406
1K01|1|A|G|1407
1K01|1|A|A|1408
1K01|1|A|U|1409
1K01|1|A|U|1410
1K01|1|A|C|1411

Current chains

Chain A

23S rRNA

Nearby chains