HL_1K01_037

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUCAGAAAAUCUAC

Length

15 nucleotides

Bulged bases

1K01|1|A|A|1507, 1K01|1|A|U|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_037 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1412

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1K01|1|A|G|1503
1K01|1|A|G|1504
1K01|1|A|U|1505
1K01|1|A|C|1506
1K01|1|A|A|1507
1K01|1|A|G|1508
1K01|1|A|A|1509
1K01|1|A|A|1510
1K01|1|A|A|1511
1K01|1|A|A|1512
1K01|1|A|U|1513
1K01|1|A|C|1514
1K01|1|A|U|1515
1K01|1|A|A|1516
1K01|1|A|C|1517

Current chains

Chain A

23S rRNA

Nearby chains