HL_1K01_040

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

1K01|1|A|A|1630, 1K01|1|A|A|1632, 1K01|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_040 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.2377

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

1K01|1|A|C|1628
1K01|1|A|G|1629
1K01|1|A|A|1630
1K01|1|A|C|1631
1K01|1|A|A|1632
1K01|1|A|C|1633
1K01|1|A|A|1634
1K01|1|A|G|1635

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Ribosomal Protein L22