HL_1K01_047

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUGCAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_047 not in the Motif Atlas

Homologous match to HL_4WF9_045

Geometric discrepancy: 0.5132

The information below is about HL_4WF9_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|G|1854
1K01|1|A|G|1855
1K01|1|A|U|1856
1K01|1|A|G|1857
1K01|1|A|C|1858
1K01|1|A|A|1859
1K01|1|A|A|1860
1K01|1|A|G|1861
1K01|1|A|C|1862

Current chains

Chain A

23S rRNA

Nearby chains