HL_1K01_052

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1K01|1|A|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_052 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1363

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

1K01|1|A|C|2227
1K01|1|A|U|2228
1K01|1|A|G|2229
1K01|1|A|G|2230
1K01|1|A|G|2231
1K01|1|A|G|2232
1K01|1|A|C|2233
1K01|1|A|G|2234
1K01|1|A|G|2235

Current chains

Chain A

23S rRNA

Nearby chains