HL_1K01_054

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

1K01|1|A|U|2285, 1K01|1|A|G|2287, 1K01|1|A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|G|2282
1K01|1|A|G|2283
1K01|1|A|U|2284
1K01|1|A|U|2285
1K01|1|A|G|2286
1K01|1|A|G|2287
1K01|1|A|A|2288
1K01|1|A|A|2289
1K01|1|A|A|2290
1K01|1|A|U|2291
1K01|1|A|C|2292

Current chains

Chain A

23S rRNA

Nearby chains