HL_1K01_065

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

1K01|1|A|A|2730, 1K01|1|A|G|2731, 1K01|1|A|C|2735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.433

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

1K01|1|A|C|2725
1K01|1|A|U|2726
1K01|1|A|G|2727
1K01|1|A|A|2728
1K01|1|A|A|2729
1K01|1|A|A|2730
1K01|1|A|G|2731
1K01|1|A|C|2732
1K01|1|A|A|2733
1K01|1|A|U|2734
1K01|1|A|C|2735
1K01|1|A|U|2736
1K01|1|A|A|2737
1K01|1|A|A|2738
1K01|1|A|G|2739

Current chains

Chain A

23S rRNA

Nearby chains