HL_1K01_070

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

1K01|1|A|A|794, 1K01|1|A|A|797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_070 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.289

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

1K01|1|A|U|792
1K01|1|A|G|793
1K01|1|A|A|794
1K01|1|A|A|795
1K01|1|A|A|796
1K01|1|A|A|797
1K01|1|A|G|798

Current chains

Chain A

23S rRNA

Nearby chains