HL_1K5I_003

3D structure

PDB id

1K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR Structure of a Ribosomal RNA Hairpin Containing a Conserved CUCAA Pentaloop

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

1K5I|3|A|U|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K5I_003 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.3693

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

1K5I|3|A|G|9
1K5I|3|A|C|10
1K5I|3|A|U|11
1K5I|3|A|C|12
1K5I|3|A|A|13
1K5I|3|A|A|14
1K5I|3|A|C|15

Current chains

Chain A

5'-R(P*GP*GP*AP*CP*CP*CP*GP*GP*GP*CP*UP*CP*AP*AP*CP*CP*UP*GP*GP*GP*UP*CP*C)-3'

Nearby chains