HL_1K8A_001
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGCCAAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1K8A_001 not in the Motif Atlas
- Homologous match to HL_4V9F_001
- Geometric discrepancy: 0.0397
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
1K8A|1|A|U|55
1K8A|1|A|G|56
1K8A|1|A|C|57
1K8A|1|A|C|58
1K8A|1|A|A|59
1K8A|1|A|A|60
1K8A|1|A|G|61
1K8A|1|A|C|62
1K8A|1|A|U|63
1K8A|1|A|G|64
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 3
- RIBOSOMAL PROTEIN L39E
- Chain T
- RIBOSOMAL PROTEIN L23
- Chain W
- RIBOSOMAL PROTEIN L29
Coloring options: