HL_1K8A_007

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAAUG

Length

7 nucleotides

Bulged bases

1K8A|1|A|C|197, 1K8A|1|A|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K8A_007 not in the Motif Atlas

Homologous match to HL_4V9F_007

Geometric discrepancy: 0.0615

The information below is about HL_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

1K8A|1|A|C|195
1K8A|1|A|G|196
1K8A|1|A|C|197
1K8A|1|A|A|198
1K8A|1|A|A|199
1K8A|1|A|U|200
1K8A|1|A|G|201

Current chains

Chain A

23S RRNA

Nearby chains

Chain M

RIBOSOMAL PROTEIN L15

Chain N

RIBOSOMAL PROTEIN L15E