HL_1K8A_029

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K8A_029 not in the Motif Atlas

Homologous match to HL_4V9F_029

Geometric discrepancy: 0.0399

The information below is about HL_4V9F_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

1K8A|1|A|G|1076
1K8A|1|A|G|1077
1K8A|1|A|A|1078
1K8A|1|A|A|1079
1K8A|1|A|C|1080
1K8A|1|A|A|1081
1K8A|1|A|A|1082
1K8A|1|A|C|1083

Current chains

Chain A

23S RRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain X

RIBOSOMAL PROTEIN L30

Chain Z

RIBOSOMAL PROTEIN L32E