HL_1K8A_052

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGCGGAGUC

Length

10 nucleotides

Bulged bases

1K8A|1|A|C|2071, 1K8A|1|A|G|2072, 1K8A|1|A|G|2073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K8A_052 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.04

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

1K8A|1|A|G|2068
1K8A|1|A|U|2069
1K8A|1|A|G|2070
1K8A|1|A|C|2071
1K8A|1|A|G|2072
1K8A|1|A|G|2073
1K8A|1|A|A|2074
1K8A|1|A|G|2075
1K8A|1|A|U|2076
1K8A|1|A|C|2077

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain Z

RIBOSOMAL PROTEIN L32E