HL_1K8A_055

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1K8A|1|A|G|2283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K8A_055 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.0461

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

1K8A|1|A|C|2281
1K8A|1|A|U|2282
1K8A|1|A|G|2283
1K8A|1|A|G|2284
1K8A|1|A|G|2285
1K8A|1|A|G|2286
1K8A|1|A|C|2287
1K8A|1|A|G|2288
1K8A|1|A|G|2289

Current chains

Chain A

23S RRNA

Nearby chains

Chain J

RIBOSOMAL PROTEIN L10E