HL_1K8A_062

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGCACAUAU

Length

9 nucleotides

Bulged bases

1K8A|1|A|C|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K8A_062 not in the Motif Atlas

Homologous match to HL_4V9F_062

Geometric discrepancy: 0.1248

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1K8A|1|A|A|2506
1K8A|1|A|G|2507
1K8A|1|A|C|2508
1K8A|1|A|A|2509
1K8A|1|A|C|2510
1K8A|1|A|A|2511
1K8A|1|A|U|2512
1K8A|1|A|A|2513
1K8A|1|A|U|2514

Current chains

Chain A

23S RRNA

Nearby chains

Chain J

RIBOSOMAL PROTEIN L10E