HL_1K8A_065

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K8A_065 not in the Motif Atlas

Homologous match to HL_4V9F_065

Geometric discrepancy: 0.0437

The information below is about HL_4V9F_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1K8A|1|A|C|2629
1K8A|1|A|G|2630
1K8A|1|A|U|2631
1K8A|1|A|G|2632
1K8A|1|A|A|2633
1K8A|1|A|G|2634

Current chains

Chain A

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L2